openalea.phenomenal.tracking.trackedPlant

Time-lapse tracking of leaves in a time-series of 3D maize segmentations. //!In the tracking algorithm, ranks start at 0. But in the final output, ranks start at 1. (see get_ranks() method)

Functions

check_time_intervals(times[, discontinuity])

If a gap between two successive time steps is too high compared to the median interval, all time-steps after the gap are invalidated

Classes

TrackedLeaf(polyline, features)	Describe a leaf organ, with attributes specific to leaf tracking algorithm.
TrackedPlant(snapshots)	Main class for leaf tracking
TrackedSnapshot(leaves, check)	Describe the plant segmentation at a given time point, particularly the order of leaves, which is modified during leaf tracking.