openalea.phenomenal.tracking

Modules

openalea.phenomenal.tracking.alignment

Multiple sequence alignment

openalea.phenomenal.tracking.alignment_postprocessing

Functions used in the following post processing steps after the alignment of sequences of ligulated leaves :

openalea.phenomenal.tracking.display

" 3D visualisation using PlantGL, and color palette for leaf ranks

openalea.phenomenal.tracking.leaf_extension

Use binary images to extend the length of each phenomenal phm_leaf.

openalea.phenomenal.tracking.median_stem

openalea.phenomenal.tracking.phenomenal_coupling

Convert segmentation objets from Phenomenal to the input format required for TrackedPlant.

openalea.phenomenal.tracking.polyline_utils

openalea.phenomenal.tracking.trackedPlant

Time-lapse tracking of leaves in a time-series of 3D maize segmentations.