openalea.phenomenal.tracking.alignment.insert_gaps

openalea.phenomenal.tracking.alignment.insert_gaps(all_sequences, seq_indexes, alignment)

Add gaps in sequences of ‘all_sequences’ whose indexes is in ‘seq_indexes’. A gap is defined as a NAN array element in a given sequence. Gaps positions are given by ‘alignment’.

Parameters:

• all_sequences (list(2D array)) –

• seq_indexes (list(int)) –

• alignment (list(int)) – result from needleman_wunsch()