openalea.phenomenal.tracking.alignment_postprocessing

Functions used in the following post-processing steps after the alignment of sequences of ligulated leaves :

• Remove abnormal columns in the alignment matrix (i.e. ranks corresponding to

artefacts, not to real leaves). (detect_abnormal_ranks)

• Backwards tracking of each leaf in its growth phase until its emergence.

(leaf_polylines_distance)

Functions

detect_abnormal_ranks(alignment_matrix)	Specific to plant alignment.
leaf_polylines_distance(polyline_ref, ...[, n])	Computes the distance between two leaf polylines.