openalea.phenomenal.tracking#

Modules

alignment

Multiple sequence alignment

alignment_postprocessing

Functions used in the following post-processing steps after the alignment of sequences of ligulated leaves :

display

" 3D visualisation using PlantGL, and color palette for leaf ranks

leaf_extension

Use binary images to extend the length of each phenomenal phm_leaf.

median_stem

phenomenal_coupling

Convert segmentation objets from Phenomenal to the input format required for TrackedPlant.

polyline_utils

trackedPlant

Time-lapse tracking of leaves in a time-series of 3D maize segmentations.