openalea.phenomenal.segmentation.skeletonize¶
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openalea.phenomenal.segmentation.skeletonize(voxel_grid, graph, subgraph=None, voxels_position_remain=None, mode='plane', plane_width=None, ball_radius=None, neighbor_size=45)[source]¶ Compute phenomenal skeletonization on the voxel_grid based on the graph.
Parameters: - voxel_grid (VoxelGrid) –
- graph (networkx.Graph) –
- subgraph (networkx.graph, optional) – If not None, perfom the computation of the shorted paths on the subgraph and remove voxels
- mode (str, optional) – Mode for intercept point along the paths. Two mode available, “ball” or “plane”. By default “plane” mode.
- plane_width (int, optional) – Size in mm of the width of the plane. By default or if None is equal to the voxel_size of the voxel_grid
- ball_radius (int, optional) – Size in mm of the radius of the ball. By default or if None is equal to the voxel_size * 4 of the voxel_grid
Returns: voxel_skeleton
Return type: